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Medium: METHANOBACTERIUM medium



Medium features

ID:119
Name:METHANOBACTERIUM medium
PH Info: 7.5, NaOH
Is Complex:true
Is Aerobic:true
Is SubMedium:false
Remarks:
Instructions:http://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium119.pdf


Metabolites list

Compounds in the medium listed by their compound names. Gram & Mol amounts are per Liter of medium. Trace metabolites & gases usually do not have amounts

Name Semi unique name Unique Name Gram Amount Mol Amount
CoCl2 x 6 H2O CoCl2 SEED-cpd00099#cpd00149## 1.87E-4 7.88E-7
KH2PO4 Potassium dihydrogen phosphate SEED-cpd00009#cpd00205## 0.49 0.00
HCl HCl SEED-cpd00099### 6.65E-4 1.90E-5
CaCl2 x 2 H2O Calcium chloride SEED-cpd00063#cpd00099## 0.05 0.00
ZnCl2 ZnCl2 SEED-cpd00034#cpd00099## 6.91E-5 5.12E-7
Na2S x 9 H2O Sodium sulfide hydrate SEED-cpd00239#cpd00971## 0.49 0.00
2-Methylbutyric acid 2-methylbutyric acid 2-methylbutyric acid# 0.49 0.00
CuCl2 x 2 H2O CuCl2 SEED-cpd00058#cpd00099## 1.97E-6 1.17E-8
CO2 CO2 SEED-cpd00011### null null
NH4Cl Ammonium chloride SEED-cpd00013#cpd00099## 0.40 0.01
Na2MoO4 x 2 H2O Na2MoO4 SEED-cpd00971#cpd11145## 3.55E-5 1.47E-7
H3BO3 Boric acid SEED-cpd09225### 5.92E-6 9.55E-8
Isovaleric acid Isovaleric acid SEED-cpd05178### 0.49 0.00
NiCl2 x 6 H2O NiCl2 SEED-cpd00099#cpd00244## 2.37E-5 9.95E-8
Isobutyric acid isobutyric acid SEED-cpd01711### 0.49 0.01
MgSO4 x 7 H2O Magnesium sulfate SEED-cpd00048#cpd00254## 0.40 0.00
H2O H2O SEED-cpd00001### null null
Resazurin Resazurin SEED-cpd08053### 9.89E-4 4.32E-6
Cysteine-HCl x H2O Cysteine-HCl SEED-cpd00084#cpd00099## 0.49 0.00
Na-formate Na-formate SEED-cpd00047#cpd00971## 1.98 0.03
NaHCO3 sodium bicarbonate SEED-cpd00242#cpd00971#cpd09249# 3.96 0.05
Yeast extract Yeast extract rich-peptone# 1.19 null
MnCl2 x 4 H2O MnCl2 SEED-cpd00030#cpd00099## 9.87E-5 4.99E-7
FeSO4 x 7 H2O Iron sulfate SEED-cpd00048#cpd10515## 1.98E-3 7.09E-6
Na-acetate Na-acetate SEED-cpd00029#cpd00971## 0.99 0.01
Valeric acid Valeric acid SEED-cpd00597### 0.49 0.00
H2 H2 SEED-cpd11640### null null
Distilled water H2O SEED-cpd00001### null null
NaCl NaCl SEED-cpd00099#cpd00971## 0.40 0.01
FeCl2 x 4 H2O Iron chloride SEED-cpd00099#cpd10516## 1.48E-3 7.45E-6
NaOH Sodium hydroxide SEED-cpd09244### null null
sludge from an anaerobic digester Sludge fluid rich-rumen# 49.46 0.05


Seed Metabolites list

All SEED compounds in the medium, listed with molar concentrations (mol/L). Some SEED compounds appear in multiple compound names in the 'metabolite list' -- here, they are combined for final molar concentrations.

Seed ID Name Mol Concentration
cpd00058 Cu2+ 1.1655676914997813E-8
cpd00244 Ni2+ 9.95362472488842E-8
cpd00242 H2CO3 0.04710093730865244
cpd01711 Isobutyrate 0.005684595882078742
cpd00030 Mn2+ 4.993183455741725E-7
cpd09249 Sodium bicarbonate 0.0
cpd00034 Zn2+ 5.115978782208855E-7
cpd00011 CO2 0.0
cpd09244 Sodium hydroxide 0.0
cpd00013 NH3 0.007465054214956236
cpd09225 Boric acid 9.548255330850626E-8
cpd00029 Acetate 0.01206243516441099
cpd00009 Phosphate 0.0036634062351174118
cpd00239 H2S 0.002032298507256423
cpd08053 Resazurin 4.319299927867691E-6
cpd00149 Co2+ 7.879952907203335E-7
cpd00971 Na+ 0.09914153312880543
cpd11145 Sodium molybdate 1.4659310701925027E-7
cpd00063 Ca2+ 3.3804500460755336E-4
cpd10515 Fe2+ 7.0891932161383355E-6
cpd10516 fe3 7.452062317632666E-6
cpd00048 Sulfate 0.00160857825774834
cpd11640 H2 0.0
cpd00084 L-Cysteine 0.0028398497946646602
cpd00047 Formate 0.029091755396520622
cpd05178 Isovaleric acid 0.004896632096444065
cpd00001 H2O 0.9505415491932878
cpd00099 Cl- 0.01784022648007207
cpd00205 K+ 0.0036634062351174118
cpd00254 Mg 0.0016014890645322018
cpd00597 Valerate 0.004896632096444065

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