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Medium:  For DSM 5388



Medium features

ID:487.1
Name: For DSM 5388
PH Info: 7.3 - 7.5
Is Complex:true
Is Aerobic:true
Is SubMedium:false
Remarks:
Instructions:http://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium487.pdf


Metabolites list

Compounds in the medium listed by their compound names. Gram & Mol amounts are per Liter of medium. Trace metabolites & gases usually do not have amounts

Name Semi unique name Unique Name Gram Amount Mol Amount
CoCl2 x 6 H2O CoCl2 SEED-cpd00099#cpd00149## 1.90E-4 7.97E-7
KH2PO4 Potassium dihydrogen phosphate SEED-cpd00009#cpd00205## 0.22 0.00
D-Ca-pantothenate D-Ca-pantothenate SEED-cpd00063#cpd00644## 5.00E-5 1.94E-7
HCl HCl SEED-cpd00099### 6.72E-4 1.92E-5
CaCl2 x 2 H2O Calcium chloride SEED-cpd00063#cpd00099## 0.02 0.00
ZnCl2 ZnCl2 SEED-cpd00034#cpd00099## 6.98E-5 5.17E-7
Na2S x 9 H2O Sodium sulfide hydrate SEED-cpd00239#cpd00971## 0.30 0.00
Pyridoxine HCl Pyridoxine HCl SEED-cpd00099#cpd00263## 1.00E-4 4.90E-7
CuCl2 x 2 H2O CuCl2 SEED-cpd00058#cpd00099## 2.00E-6 1.18E-8
CO2 CO2 SEED-cpd00011### null null
NH4Cl Ammonium chloride SEED-cpd00013#cpd00099## 1.00 0.02
Thiamine-HCl x 2 H2O Thiamine-HCl SEED-cpd00099#cpd00305## 5.00E-5 1.49E-7
H3BO3 Boric acid SEED-cpd09225### 5.99E-6 9.65E-8
Na2MoO4 x 2 H2O Na2MoO4 SEED-cpd00971#cpd11145## 3.59E-5 1.48E-7
NiCl2 x 6 H2O NiCl2 SEED-cpd00099#cpd00244## 2.39E-5 1.01E-7
L-Alanine L-Alanine SEED-cpd00035### 2.20 0.02
MgSO4 x 7 H2O Magnesium sulfate SEED-cpd00048#cpd00254## 5.50 0.02
H2O H2O SEED-cpd00001### null null
Resazurin Resazurin SEED-cpd08053### 1.00E-3 4.37E-6
Folic acid Folic acid SEED-cpd00393### 2.00E-5 4.56E-8
Biotin Biotin SEED-cpd00104### 2.00E-5 8.23E-8
NaHCO3 sodium bicarbonate SEED-cpd00242#cpd00971#cpd09249# 5.00 0.06
sodium chloride Sodium chloride SEED-cpd00099#cpd00971## 10.00 0.17
Yeast extract Yeast extract rich-peptone# 1.00 null
K2HPO4 di Potassium hydrogen phosphate SEED-cpd00009#cpd00205## 0.36 0.00
MnCl2 x 4 H2O MnCl2 SEED-cpd00030#cpd00099## 9.98E-5 5.05E-7
Nicotinic acid Niacin SEED-cpd00218### 5.00E-5 4.10E-7
N2 N2 SEED-cpd00528### null null
Na2SeO3 x 5 H2O Sodium selenite SEED-cpd00971#cpd03387## 1.50E-5 5.64E-8
Lipoic acid Lipoic acid SEED-cpd00541### 5.00E-5 2.44E-7
Betaine x H2O Betaine SEED-cpd00540### 6.00 0.04
p-Aminobenzoic acid p Aminobenzoic acid (PABA) SEED-cpd00443### 5.00E-5 3.68E-7
Vitamin B12 Coenzyme B12 SEED-cpd00166### 1.00E-6 6.33E-10
Riboflavin Riboflavin SEED-cpd00220### 5.00E-5 1.33E-7
Distilled water H2O SEED-cpd00001### null null
NaCl NaCl SEED-cpd00099#cpd00971## 60.00 1.03
FeCl2 x 4 H2O Iron chloride SEED-cpd00099#cpd10516## 1.50E-3 7.53E-6


Seed Metabolites list

All SEED compounds in the medium, listed with molar concentrations (mol/L). Some SEED compounds appear in multiple compound names in the 'metabolite list' -- here, they are combined for final molar concentrations.

Seed ID Name Mol Concentration
cpd00058 Cu2+ 1.178388936106279E-8
cpd00244 Ni2+ 1.0063114596862194E-7
cpd00242 H2CO3 0.05952380952380952
cpd00220 RIBF 1.3297872340425533E-7
cpd00030 Mn2+ 5.048108473754884E-7
cpd09249 Sodium bicarbonate 0.0
cpd00035 L-Alanine 0.02471910112359551
cpd00034 Zn2+ 5.172254548813152E-7
cpd00011 CO2 0.0
cpd00013 NH3 0.018867924528301886
cpd09225 Boric acid 9.653286139489984E-8
cpd00540 BET 0.04439511653718091
cpd00541 Lipoate 2.439024390243903E-7
cpd00009 Phosphate 0.003709323116219668
cpd00239 H2S 0.0012327922745017463
cpd00218 Niacin 4.098360655737705E-7
cpd00263 Pyridoxol 4.901960784313725E-7
cpd08053 Resazurin 4.3668122270742355E-6
cpd00443 ABEE 3.6764705882352943E-7
cpd00149 Co2+ 7.966632389182573E-7
cpd00166 Calomide 6.333122229259026E-10
cpd03387 Selenite 5.644402634054562E-8
cpd00971 Na+ 1.2688863550962661
cpd11145 Sodium molybdate 1.4820563119646202E-7
cpd00063 Ca2+ 1.7107554827873063E-4
cpd00528 N2 0.0
cpd00644 PAN 1.9379844961240311E-7
cpd10516 fe3 7.534035003126625E-6
cpd00048 Sulfate 0.022262699858328273
cpd00001 H2O 0.990997506234414
cpd00305 THI 1.486767766874814E-7
cpd00099 Cl- 1.226145010919125
cpd00104 BIOT 8.23045267489712E-8
cpd00205 K+ 0.005766794380587484
cpd00254 Mg 0.022262699858328273
cpd00393 FOL 4.555808656036447E-8

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