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Medium:  pyruvate as an alternative substrate for DSM 6008, DSM 14886 and DSM 16521



Medium features

ID:507.1
Name: pyruvate as an alternative substrate for DSM 6008, DSM 14886 and DSM 16521
PH Info: 7
Is Complex:true
Is Aerobic:true
Is SubMedium:false
Remarks:
Instructions:http://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium507.pdf


Metabolites list

Compounds in the medium listed by their compound names. Gram & Mol amounts are per Liter of medium. Trace metabolites & gases usually do not have amounts

Name Semi unique name Unique Name Gram Amount Mol Amount
CoCl2 x 6 H2O CoCl2 SEED-cpd00099#cpd00149## 1.96E-4 8.24E-7
KH2PO4 Potassium dihydrogen phosphate SEED-cpd00009#cpd00205## 0.32 0.00
D-Ca-pantothenate D-Ca-pantothenate SEED-cpd00063#cpd00644## 4.90E-5 1.90E-7
CaCl2 x 2 H2O Calcium chloride SEED-cpd00063#cpd00099## 0.28 0.00
Na2S x 9 H2O Sodium sulfide hydrate SEED-cpd00239#cpd00971## 0.29 0.00
Pyridoxine HCl Pyridoxine HCl SEED-cpd00099#cpd00263## 2.45E-4 1.20E-6
CuCl2 x 2 H2O CuCl2 SEED-cpd00058#cpd00099## 9.80E-6 5.79E-8
NH4Cl Ammonium chloride SEED-cpd00013#cpd00099## 0.32 0.01
CO2 CO2 SEED-cpd00011### null null
Thiamine-HCl x 2 H2O Thiamine-HCl SEED-cpd00099#cpd00305## 1.47E-4 4.37E-7
Calcium pantothenate Calcium pantothenate SEED-cpd00063#cpd00644## 4.90E-5 1.90E-7
Na2MoO4 x 2 H2O Na2MoO4 SEED-cpd00971#cpd11145## 2.94E-5 1.21E-7
H3BO3 Boric acid SEED-cpd09225### 2.94E-4 4.74E-6
MgCl2 x 6 H2O Magnesium chloride SEED-cpd00099#cpd00254#cpd04877# 0.51 0.00
NiCl2 x 6 H2O NiCl2 SEED-cpd00099#cpd00244## 1.96E-5 8.24E-8
H2O H2O SEED-cpd00001### null null
EDTA EDTA SEED-cpd00240### 4.90E-3 1.70E-5
Resazurin Resazurin SEED-cpd08053### 4.90E-4 2.14E-6
pyruvate pyruvate SEED-cpd00020### 2.45 0.03
Folic acid Folic acid SEED-cpd00393### 1.96E-5 4.46E-8
Biotin Biotin SEED-cpd00104### 1.96E-5 8.07E-8
NaHCO3 sodium bicarbonate SEED-cpd00242#cpd00971#cpd09249# 97.99 1.17
KCl KCl SEED-cpd00099#cpd00205## 0.32 0.00
Yeast extract Yeast extract rich-peptone# 0.05 null
MnCl2 x 4 H2O MnCl2 SEED-cpd00030#cpd00099## 2.94E-5 1.49E-7
FeSO4 x 7 H2O Iron sulfate SEED-cpd00048#cpd10515## 1.96E-3 7.02E-6
Nicotinic acid Niacin SEED-cpd00218### 1.47E-4 1.20E-6
N2 N2 SEED-cpd00528### null null
Lipoic acid Lipoic acid SEED-cpd00541### 4.90E-5 2.39E-7
p-Aminobenzoic acid p Aminobenzoic acid (PABA) SEED-cpd00443### 8.82E-5 6.48E-7
Vitamin B12 Coenzyme B12 SEED-cpd00166### 5.00E-5 3.17E-8
Riboflavin Riboflavin SEED-cpd00220### 4.90E-5 1.30E-7
ZnSO4 x 7 H2O ZnSO4 SEED-cpd00034#cpd00048## 9.80E-5 3.40E-7
Distilled water H2O SEED-cpd00001### null null
D(+)-Biotin D(+)-Biotin SEED-cpd00104### 9.80E-6 4.03E-8
NaOH Sodium hydroxide SEED-cpd09244### null null


Seed Metabolites list

All SEED compounds in the medium, listed with molar concentrations (mol/L). Some SEED compounds appear in multiple compound names in the 'metabolite list' -- here, they are combined for final molar concentrations.

Seed ID Name Mol Concentration
cpd00058 Cu2+ 5.7880201295764073E-8
cpd00244 Ni2+ 8.238014358447128E-8
cpd00242 H2CO3 1.1665616761158164
cpd00220 RIBF 1.3030742126825607E-7
cpd00030 Mn2+ 1.4877203561800897E-7
cpd09249 Sodium bicarbonate 0.0
cpd00034 Zn2+ 3.401880951006026E-7
cpd00011 CO2 0.0
cpd00240 EDTA 1.6953491486804253E-5
cpd09244 Sodium hydroxide 0.0
cpd00013 NH3 0.006101337672062345
cpd09225 Boric acid 4.7415087480836405E-6
cpd04877 Magnesium chloride 0.0
cpd00541 Lipoate 2.3900287998470383E-7
cpd00009 Phosphate 0.0023953399749578096
cpd00239 H2S 0.001208027706518125
cpd00218 Niacin 1.2048095999228925E-6
cpd00263 Pyridoxol 1.2008723136486346E-6
cpd08053 Resazurin 2.13954543217748E-6
cpd00443 ABEE 6.484710493702627E-7
cpd00149 Co2+ 8.238014358447128E-7
cpd00020 Pyruvate 0.028158385285554186
cpd00166 Calomide 3.165009639316122E-8
cpd00971 Na+ 1.1689779741813846
cpd11145 Sodium molybdate 1.2132626594353517E-7
cpd00063 Ca2+ 0.0019427887260333135
cpd00528 N2 0.0
cpd10515 Fe2+ 7.023198766796529E-6
cpd00644 PAN 3.798107782702658E-7
cpd00048 Sulfate 7.363386861897132E-6
cpd00001 H2O 1.0
cpd00305 THI 4.370703871263541E-7
cpd00099 Cl- 0.01938260817041727
cpd00104 BIOT 1.209767664120106E-7
cpd00205 K+ 0.006765216956299759
cpd00254 Mg 0.002511356038084715
cpd00393 FOL 4.464290696753011E-8

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