Medium: TMBS4 medium Medium features ID:559 Name:TMBS4 medium PH Info: 7.2 - 7.4 Is Complex:true Is Aerobic:true Is SubMedium:false Remarks: Instructions:http://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium559.pdf Metabolites list Compounds in the medium listed by their compound names. Gram & Mol amounts are per Liter of medium. Trace metabolites & gases usually do not have amounts Name Semi unique name Unique Name Gram Amount Mol Amount CoCl2 x 6 H2O CoCl2 SEED-cpd00099#cpd00149## 1.90E-4 7.97E-7 KH2PO4 Potassium dihydrogen phosphate SEED-cpd00009#cpd00205## 0.20 0.00 D-Ca-pantothenate D-Ca-pantothenate SEED-cpd00063#cpd00644## 5.00E-5 1.94E-7 HCl HCl SEED-cpd00099### 6.72E-4 1.92E-5 CaCl2 x 2 H2O Calcium chloride SEED-cpd00063#cpd00099## 0.15 0.00 ZnCl2 ZnCl2 SEED-cpd00034#cpd00099## 6.98E-5 5.17E-7 Pyridoxine HCl Pyridoxine HCl SEED-cpd00099#cpd00263## 1.00E-4 4.90E-7 CuCl2 x 2 H2O CuCl2 SEED-cpd00058#cpd00099## 2.00E-6 1.18E-8 CO2 CO2 SEED-cpd00011### null null NH4Cl Ammonium chloride SEED-cpd00013#cpd00099## 0.25 0.00 Thiamine-HCl x 2 H2O Thiamine-HCl SEED-cpd00099#cpd00305## 5.00E-5 1.49E-7 H3BO3 Boric acid SEED-cpd09225### 5.99E-6 9.65E-8 Na2MoO4 x 2 H2O Na2MoO4 SEED-cpd00971#cpd11145## 3.59E-5 1.48E-7 MgCl2 x 6 H2O Magnesium chloride SEED-cpd00099#cpd00254#cpd04877# 0.40 0.00 NiCl2 x 6 H2O NiCl2 SEED-cpd00099#cpd00244## 2.39E-5 1.01E-7 H2O H2O SEED-cpd00001### null null Resazurin Resazurin SEED-cpd08053### 5.00E-4 2.18E-6 syringic acid syringic acid SEED-cpd07719### 0.60 0.00 Folic acid Folic acid SEED-cpd00393### 2.00E-5 4.56E-8 Dithiothreitol Dithiothreitol SEED-cpd00228### 0.15 0.00 Biotin Biotin SEED-cpd00104### 2.00E-5 8.23E-8 sodium dithionite sodium dithionite dithionite# 0.02 0.00 Na2WO4 x 2 H2O Na2WO4 SEED-cpd00971#cpd15574## 4.00E-6 2.72E-8 NaHCO3 sodium bicarbonate SEED-cpd00242#cpd00971#cpd09249# 1.50 0.02 KCl KCl SEED-cpd00099#cpd00205## 0.50 0.01 Yeast extract Yeast extract rich-peptone# 1.00 null MnCl2 x 4 H2O MnCl2 SEED-cpd00030#cpd00099## 9.98E-5 5.05E-7 Nicotinic acid Niacin SEED-cpd00218### 5.00E-5 4.10E-7 N2 N2 SEED-cpd00528### null null Lipoic acid Lipoic acid SEED-cpd00541### 5.00E-5 2.44E-7 Na2SeO3 x 5 H2O Sodium selenite SEED-cpd00971#cpd03387## 3.00E-6 1.13E-8 p-Aminobenzoic acid p Aminobenzoic acid (PABA) SEED-cpd00443### 5.00E-5 3.68E-7 Na-thiosulfate Na-thiosulfate SEED-cpd00268#cpd00971## 0.10 0.00 Riboflavin Riboflavin SEED-cpd00220### 5.00E-5 1.33E-7 Vitamin B12 Coenzyme B12 SEED-cpd00166### 5.00E-5 3.17E-8 Distilled water H2O SEED-cpd00001### null null FeCl2 x 4 H2O Iron chloride SEED-cpd00099#cpd10516## 1.50E-3 7.53E-6 NaCl NaCl SEED-cpd00099#cpd00971## 1.00 0.02 sodium phosphate buffer Na-phosphate buffer SEED-cpd00009#cpd00971## null null NaOH Sodium hydroxide SEED-cpd09244### 5.00E-4 2.78E-5 Seed Metabolites list All SEED compounds in the medium, listed with molar concentrations (mol/L). Some SEED compounds appear in multiple compound names in the 'metabolite list' -- here, they are combined for final molar concentrations. Seed ID Name Mol Concentration cpd00058 Cu2+ 1.178388936106279E-8 cpd00244 Ni2+ 1.0063114596862194E-7 cpd00242 H2CO3 0.017857142857142856 cpd07719 Syringic acid 0.003045685279187817 cpd00220 RIBF 1.3297872340425533E-7 cpd00030 Mn2+ 5.048108473754884E-7 cpd09249 Sodium bicarbonate 0.0 cpd00034 Zn2+ 5.172254548813152E-7 cpd00011 CO2 0.0 cpd09244 Sodium hydroxide 2.777777777777778E-5 cpd00013 NH3 0.0047169811320754715 cpd09225 Boric acid 9.653286139489984E-8 cpd04877 Magnesium chloride 0.0 cpd00541 Lipoate 2.439024390243903E-7 cpd00009 Phosphate 0.0014814814814814816 cpd00268 H2S2O3 7.407407407407408E-4 cpd00218 Niacin 4.098360655737705E-7 cpd00263 Pyridoxol 4.901960784313725E-7 cpd08053 Resazurin 2.1834061135371177E-6 cpd00443 ABEE 3.6764705882352943E-7 cpd00149 Co2+ 7.966632389182573E-7 cpd00166 Calomide 3.166561114629512E-8 cpd03387 Selenite 1.1288805268109125E-8 cpd15574 tungstate 2.715546503733876E-8 cpd00971 Na+ 0.035839636208031427 cpd11145 Sodium molybdate 1.4820563119646202E-7 cpd00063 Ca2+ 0.0010254842974243216 cpd00528 N2 0.0 cpd00644 PAN 1.9379844961240311E-7 cpd10516 fe3 7.534035003126625E-6 cpd00001 H2O 0.941997506234414 cpd00305 THI 1.486767766874814E-7 cpd00228 Dithiothreitol 0.001 cpd00099 Cl- 0.034747298343946326 cpd00104 BIOT 8.23045267489712E-8 cpd00205 K+ 0.008238238238238238 cpd00254 Mg 0.001971414489896501 cpd00393 FOL 4.555808656036447E-8
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