Komodo Logo KOMODO -- the Known Media Database
A platform for recommending microbial media
Home   Organisms Media   Media List   GrowRec   Acknowledgement   Contact Us

Medium: GEOBACTER MEDIUM



Medium features

ID:579
Name:GEOBACTER MEDIUM
PH Info: 6.7 - 7.0
Is Complex:false
Is Aerobic:true
Is SubMedium:false
Remarks:
Instructions:http://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium579.pdf


Metabolites list

Compounds in the medium listed by their compound names. Gram & Mol amounts are per Liter of medium. Trace metabolites & gases usually do not have amounts

Name Semi unique name Unique Name Gram Amount Mol Amount
D-Ca-pantothenate D-Ca-pantothenate SEED-cpd00063#cpd00644## 5.00E-5 1.94E-7
CaCl2 x 2 H2O Calcium chloride SEED-cpd00063#cpd00099## 1.00E-3 6.84E-6
CuSO4 x 5 H2O CuSO4 SEED-cpd00048#cpd00058## 1.00E-4 4.00E-7
KOH KOH SEED-cpd00001#cpd00205## null null
Pyridoxine HCl Pyridoxine HCl SEED-cpd00099#cpd00263## 1.00E-4 4.90E-7
Thiamine-HCl x 2 H2O Thiamine-HCl SEED-cpd00099#cpd00305## 5.00E-5 1.49E-7
NaH2PO4 NaH2PO4 SEED-cpd00009#cpd00971## 0.60 0.00
NH4Cl Ammonium chloride SEED-cpd00013#cpd00099## 1.50 0.03
H3BO3 Boric acid SEED-cpd09225### 1.00E-4 1.61E-6
Na2MoO4 x 2 H2O Na2MoO4 SEED-cpd00971#cpd11145## 1.00E-4 4.13E-7
NiCl2 x 6 H2O NiCl2 SEED-cpd00099#cpd00244## 3.00E-4 1.26E-6
MnSO4 x H2O MnSO4 SEED-cpd00030#cpd00048## 5.00E-3 2.96E-5
MgSO4 x 7 H2O Magnesium sulfate SEED-cpd00048#cpd00254## 0.03 0.00
H2O H2O SEED-cpd00001### null null
Folic acid Folic acid SEED-cpd00393### 2.00E-5 4.56E-8
Biotin Biotin SEED-cpd00104### 2.00E-5 8.23E-8
NaHCO3 sodium bicarbonate SEED-cpd00242#cpd00971#cpd09249# 2.50 0.03
Na2WO4 x 2 H2O Na2WO4 SEED-cpd00971#cpd15574## 2.50E-4 1.70E-6
KCl KCl SEED-cpd00099#cpd00205## 0.10 0.00
Na-acetate Na-acetate SEED-cpd00029#cpd00971## 2.50 0.03
FeSO4 x 7 H2O Iron sulfate SEED-cpd00048#cpd10515## 1.00E-3 3.58E-6
Nitrilotriacetic acid Nitrilotriacetic acid SEED-cpd10393### 0.02 0.00
Nicotinic acid Niacin SEED-cpd00218### 5.00E-5 4.10E-7
Na2SeO3 x 5 H2O Sodium selenite SEED-cpd00971#cpd03387## 3.00E-6 1.13E-8
Lipoic acid Lipoic acid SEED-cpd00541### 5.00E-5 2.44E-7
CoSO4 x 7 H2O CoSO4 SEED-cpd00048#cpd00149## 1.80E-3 6.38E-6
p-Aminobenzoic acid p Aminobenzoic acid (PABA) SEED-cpd00443### 5.00E-5 3.68E-7
KAl(SO4)2 x 12 H2O potassium alum alum# 2.00E-4 4.20E-7
Vitamin B12 Coenzyme B12 SEED-cpd00166### 1.00E-6 6.33E-10
Riboflavin Riboflavin SEED-cpd00220### 5.00E-5 1.33E-7
ZnSO4 x 7 H2O ZnSO4 SEED-cpd00034#cpd00048## 1.80E-3 6.25E-6
NaCl NaCl SEED-cpd00099#cpd00971## 0.01 0.00
Fe(III)citrate Fe(III)citrate SEED-cpd00137#cpd10516## 13.70 0.06


Seed Metabolites list

All SEED compounds in the medium, listed with molar concentrations (mol/L). Some SEED compounds appear in multiple compound names in the 'metabolite list' -- here, they are combined for final molar concentrations.

Seed ID Name Mol Concentration
cpd00058 Cu2+ 4.004004004004004E-7
cpd00244 Ni2+ 1.2610340479192938E-6
cpd00242 H2CO3 0.02976190476190476
cpd00137 Citrate 0.05591836734693877
cpd00220 RIBF 1.3297872340425533E-7
cpd00030 Mn2+ 2.9559562518474725E-5
cpd09249 Sodium bicarbonate 0.0
cpd00034 Zn2+ 6.248915118902968E-6
cpd00013 NH3 0.02830188679245283
cpd09225 Boric acid 1.6129032258064516E-6
cpd00029 Acetate 0.03048780487804878
cpd00541 Lipoate 2.439024390243903E-7
cpd00009 Phosphate 0.004225352112676056
cpd00218 Niacin 4.098360655737705E-7
cpd00263 Pyridoxol 4.901960784313725E-7
cpd00443 ABEE 3.6764705882352943E-7
cpd00149 Co2+ 6.381847190214501E-6
cpd00166 Calomide 6.333122229259026E-10
cpd10393 Triglycollamic acid 7.978723404255319E-5
cpd03387 Selenite 1.1288805268109124E-8
cpd15574 tungstate 1.6972165648336727E-6
cpd00971 Na+ 0.06887707009217861
cpd11145 Sodium molybdate 4.127115146512588E-7
cpd00063 Ca2+ 7.029068442777133E-6
cpd00644 PAN 1.9379844961240311E-7
cpd10515 Fe2+ 3.5835871707579286E-6
cpd10516 fe3 0.05591836734693877
cpd00048 Sulfate 1.6760722071690475E-4
cpd00001 H2O 1.0
cpd00305 THI 1.486767766874814E-7
cpd00099 Cl- 0.029842483417844918
cpd00104 BIOT 8.23045267489712E-8
cpd00205 K+ 0.0013513513513513514
cpd00254 Mg 1.2143290831815421E-4
cpd00393 FOL 4.555808656036447E-8

If you encounter problems please send their details to raphy.zarecki@gmail.com