Medium: METHANOCALCULUS PUMILUS medium Medium features ID:892 Name:METHANOCALCULUS PUMILUS medium PH Info: 7.3 - 7.5 Is Complex:true Is Aerobic:true Is SubMedium:false Remarks: Instructions:http://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium892.pdf Metabolites list Compounds in the medium listed by their compound names. Gram & Mol amounts are per Liter of medium. Trace metabolites & gases usually do not have amounts Name Semi unique name Unique Name Gram Amount Mol Amount D-Ca-pantothenate D-Ca-pantothenate SEED-cpd00063#cpd00644## 4.85E-5 1.88E-7 CoCl2 x 6 H2O CoCl2 SEED-cpd00099#cpd00149## 4.66E-4 1.96E-6 CaCl2 x 2 H2O Calcium chloride SEED-cpd00063#cpd00099## 1.94E-3 1.33E-5 Na2S x 9 H2O Sodium sulfide hydrate SEED-cpd00239#cpd00971## 0.49 0.00 ZnCl2 ZnCl2 SEED-cpd00034#cpd00099## 1.94E-3 1.44E-5 Pyridoxine HCl Pyridoxine HCl SEED-cpd00099#cpd00263## 9.71E-5 4.76E-7 KOH KOH SEED-cpd00001#cpd00205## null null Thiamine-HCl x 2 H2O Thiamine-HCl SEED-cpd00099#cpd00305## 4.85E-5 1.44E-7 CO2 CO2 SEED-cpd00011### null null NH4Cl Ammonium chloride SEED-cpd00013#cpd00099## 0.87 0.02 CuCl2 x 2 H2O CuCl2 SEED-cpd00058#cpd00099## 4.85E-4 2.87E-6 Na2MoO4 x 2 H2O Na2MoO4 SEED-cpd00971#cpd11145## 4.66E-4 1.92E-6 H3BO3 Boric acid SEED-cpd09225### 1.94E-4 3.13E-6 MgCl2 x 6 H2O Magnesium chloride SEED-cpd00099#cpd00254#cpd04877# 0.35 0.00 NiCl2 x 6 H2O NiCl2 SEED-cpd00099#cpd00244## 2.33E-3 9.79E-6 H2O H2O SEED-cpd00001### null null Trypticase (BBL) Trypticase rich-peptone# 1.94 null Cysteine-HCl x H2O Cysteine-HCl SEED-cpd00084#cpd00099## 0.49 0.00 Resazurin Resazurin SEED-cpd08053### 4.85E-4 2.12E-6 Na2CO3 Sodium carbonate SEED-cpd00242#cpd00971## 4.85 0.05 Folic acid Folic acid SEED-cpd00393### 1.94E-5 4.42E-8 Biotin Biotin SEED-cpd00104### 1.94E-5 7.99E-8 Yeast extract Yeast extract rich-peptone# 1.94 null K2HPO4 di Potassium hydrogen phosphate SEED-cpd00009#cpd00205## 0.39 0.00 MnCl2 x 4 H2O MnCl2 SEED-cpd00030#cpd00099## 1.94E-3 9.83E-6 Nitrilotriacetic acid (NTA) NTA SEED-cpd10393### 0.25 0.00 Nicotinic acid Niacin SEED-cpd00218### 4.85E-5 3.98E-7 N2 N2 SEED-cpd00528### null null Lipoic acid Lipoic acid SEED-cpd00541### 4.85E-5 2.37E-7 Na2SeO3 x 5 H2O Sodium selenite SEED-cpd00971#cpd03387## 5.05E-4 1.90E-6 p-Aminobenzoic acid p Aminobenzoic acid (PABA) SEED-cpd00443### 4.85E-5 3.57E-7 FeCl3 x 6 H2O Iron chloride SEED-cpd00099#cpd10516## 0.03 0.00 Riboflavin Riboflavin SEED-cpd00220### 4.85E-5 1.29E-7 Vitamin B12 Coenzyme B12 SEED-cpd00166### 9.71E-7 6.15E-10 H2 H2 SEED-cpd11640### null null Distilled water H2O SEED-cpd00001### null null NaCl NaCl SEED-cpd00099#cpd00971## 9.73 0.17 Seed Metabolites list All SEED compounds in the medium, listed with molar concentrations (mol/L). Some SEED compounds appear in multiple compound names in the 'metabolite list' -- here, they are combined for final molar concentrations. Seed ID Name Mol Concentration cpd00058 Cu2+ 2.8673177389479237E-6 cpd00244 Ni2+ 9.794439207140144E-6 cpd00242 H2CO3 0.045367933944288175 cpd00220 RIBF 1.291055567031605E-7 cpd00030 Mn2+ 9.826657757163635E-6 cpd00034 Zn2+ 1.4383315354189142E-5 cpd00011 CO2 0.0 cpd00013 NH3 0.016486535995603593 cpd09225 Boric acid 3.1318509238960228E-6 cpd04877 Magnesium chloride 0.0 cpd00541 Lipoate 2.3679848448969927E-7 cpd00009 Phosphate 0.002231893761856936 cpd00239 H2S 0.0019948095056662564 cpd00218 Niacin 3.9789909279006847E-7 cpd00263 Pyridoxol 4.759185227489054E-7 cpd08053 Resazurin 2.1198117607156487E-6 cpd00443 ABEE 3.5693889206167906E-7 cpd00149 Co2+ 1.9588878414280293E-6 cpd00166 Calomide 6.148662358503909E-10 cpd10393 Triglycollamic acid 0.0013220409006403637 cpd03387 Selenite 1.899734219875969E-6 cpd00971 Na+ 0.2624599492034902 cpd11145 Sodium molybdate 1.9233157964330507E-6 cpd00063 Ca2+ 1.3460522753341614E-5 cpd00528 N2 0.0 cpd00644 PAN 1.8815383457514864E-7 cpd10516 fe3 9.712335025198116E-5 cpd11640 H2 0.0 cpd00084 L-Cysteine 0.002787464215928128 cpd00001 H2O 1.0 cpd00305 THI 1.443463851334771E-7 cpd00099 Cl- 0.19084220307507244 cpd00104 BIOT 7.990730752327302E-8 cpd00205 K+ 0.004463787523713872 cpd00254 Mg 0.0017225951853464569 cpd00393 FOL 4.423115200035386E-8
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